Unrecognizable characters in the full path name of a file are detected and tell you what needs to be changed for import or export. We catch and handle a problem that was seen primarily on non-English systems on Windows. * Unusable characters in file names are detected on Windows The Advanced Expression type-in box has been made wider to accommodate longer advanced expressions for complex naming conventions. * In Assemble by Name, more room for Advanced Expression We addressed an issue so that ACE and CAF files are now enabled and selectable in the file lists when importing ACE and CAF projects. We addressed changes that Apple Computer made which affected file type recognition as well as a change that affected Clustal. * Improved “Snow Leopard” compatibility (Macintosh) There is a new command to assist you in navigating to and opening the log file.Īt the request of users, more warning dialogues have been given a “Don’t show this message again” checkbox.Įnds trimming and vector trimming are now ubstantially faster operations, especially on large data sets. Spr and those with allowed Apple “TYPE” and “Creator” codes. We addressed the change that Apple Computer introduced so that all the correct file types are visible in the Open Project dialog, including files ending with. * Improved support for file extensions on Apple’s “Snow Leopard” operating system Project Window columns may now be sorted in an ascending or descending order for any column. The Scroll Wheel on a mouse now allows you to scroll vertically through the lists in the “Assemble Interactively” dialogue. It is now possible to set the scaling of chromatograms in the Variance Detail report. * Chromatograms on the Variance Detail Report The ability to open the Feature Listing has been extended from one sequence to a number of sequences at the same time. New AppleScript commands have been added to Get and Set the Selection state of an item. * New AppleScript commands to access whether an item is Selected Comments on the Project can also be accessed through Get and Set commands in AppleScript. New AppleScript commands have been added to Get and Set labels and comments on any fragment, contig, or refrigerator in the Project Window. * New AppleScript commands Get and Retrieve project item values * New Difference Column in the Variance TableĪ new column containing the total number of differences has been added to a number of the Variance Table reports.Ī new option to sort “by Handle” has been added to the Contig Editor Overview. When the Compare Consensus to Reference command is used, you see Confidence Range colors in the cells of the table where there are variant bases. * Consensus by Confidence in the Variance Table cep), you can import those projects into Sequencher, including sequence bases, names, contigs, electropherograms, features, confidence scores, base edits (including insertions and deletions), and comments. * Support for Contig Express project files (the assembler from VectorNTI)įor those of you who have legacy projects assembled with ContigExpress (file extension. These are FastQ, FastA aligned, and Contig Express projects. Three major formats have been added to the extensive set currently available. Nucleotide frequency information is now available as a report. With this new command, bases of a chosen sequence are randomized to create a new sequence with the same composition but a different order. This is only applicable if you have computed the consensus using the By Confidence method.Ī new version of the Overview shows the depth of forward and reverse coverage as a histogram. * “Create New Sequence from Consensus” includes consensus confidence scores. When Consensus by Confidence is used, the consensus line can show confidence shading. * Consensus line shows confidence shading Consensus byĬonfidence uses the base with the highest confidence score in the column to use as the consensus base. There is a new method that can be chosen for computing the bases that make up the consensus string. * Option to Compute Consensus by Confidence
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